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RBFOX1 RNA binding fox-1 homolog 1 [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108308158, updated on 14-Mar-2024

Summary

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Gene symbol
RBFOX1
Gene description
RNA binding fox-1 homolog 1
See related
Ensembl:ENSCCAG00000023031
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107319.1 (4117915..4872171, complement)

NW_016107319.1Genomic Context describing neighboring genes Neighboring gene U4atac minor spliceosomal RNA Neighboring gene uncharacterized LOC119472181 Neighboring gene uncharacterized LOC108308320 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107319 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 1
Names
RNA binding protein, fox-1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107319.1 Reference Cebus_imitator-1.0

    Range
    4117915..4872171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017533966.2 → XP_017389455.2  RNA binding protein fox-1 homolog 1 isoform X7

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    pfam12414
    Location:276 → 363
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:139 → 214
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:33 → 199
    Agg_substance; LPXTG-anchored aggregation substance

  2. XM_037740311.1 → XP_037596239.1  RNA binding protein fox-1 homolog 1 isoform X18

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    pfam12414
    Location:251 → 338
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:114 → 189
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:8 → 174
    Agg_substance; LPXTG-anchored aggregation substance

  3. XM_037740353.1 → XP_037596281.1  RNA binding protein fox-1 homolog 1 isoform X29

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    PRK03427
    Location:4 → 102
    PRK03427; cell division protein ZipA; Provisional
    pfam12414
    Location:234 → 321
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:97 → 172
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  4. XM_037740351.1 → XP_037596279.1  RNA binding protein fox-1 homolog 1 isoform X29

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    PRK03427
    Location:4 → 102
    PRK03427; cell division protein ZipA; Provisional
    pfam12414
    Location:234 → 321
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:97 → 172
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  5. XM_017534045.2 → XP_017389534.1  RNA binding protein fox-1 homolog 1 isoform X30

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  6. XM_017533939.2 → XP_017389428.1  RNA binding protein fox-1 homolog 1 isoform X13

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  7. XM_017533943.2 → XP_017389432.1  RNA binding protein fox-1 homolog 1 isoform X14

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  8. XM_017533927.2 → XP_017389416.1  RNA binding protein fox-1 homolog 1 isoform X12

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  9. XM_037740359.1 → XP_037596287.1  RNA binding protein fox-1 homolog 1 isoform X35

    UniProtKB/TrEMBL
    A0A2K5Q446
    Conserved Domains (3) summary
    pfam12414
    Location:265 → 354
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:156 → 231
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:50 → 216
    Agg_substance; LPXTG-anchored aggregation substance

  10. XM_017534036.2 → XP_017389525.1  RNA binding protein fox-1 homolog 1 isoform X28

    UniProtKB/TrEMBL
    A0A2K5Q446

  11. XM_017534028.2 → XP_017389517.1  RNA binding protein fox-1 homolog 1 isoform X26

    UniProtKB/TrEMBL
    A0A2K5Q446

  12. XM_017533909.2 → XP_017389398.1  RNA binding protein fox-1 homolog 1 isoform X9

    UniProtKB/TrEMBL
    A0A2K5Q446

  13. XM_017533950.2 → XP_017389439.1  RNA binding protein fox-1 homolog 1 isoform X15

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  14. XM_017534008.2 → XP_017389497.1  RNA binding protein fox-1 homolog 1 isoform X23

    UniProtKB/TrEMBL
    A0A2K5Q4B4

  15. XM_017533845.2 → XP_017389334.1  RNA binding protein fox-1 homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  16. XM_017534032.2 → XP_017389521.1  RNA binding protein fox-1 homolog 1 isoform X27

    UniProtKB/TrEMBL
    A0A2K5Q446

  17. XM_017533918.2 → XP_017389407.1  RNA binding protein fox-1 homolog 1 isoform X10

    UniProtKB/TrEMBL
    A0A2K5Q446

  18. XM_017534017.2 → XP_017389506.1  RNA binding protein fox-1 homolog 1 isoform X24

    UniProtKB/TrEMBL
    A0A2K5Q4B4

  19. XM_017533864.2 → XP_017389353.1  RNA binding protein fox-1 homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  20. XM_017533853.2 → XP_017389342.1  RNA binding protein fox-1 homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  21. XM_017533925.2 → XP_017389414.1  RNA binding protein fox-1 homolog 1 isoform X11

    UniProtKB/TrEMBL
    A0A2K5Q446

  22. XM_017533981.2 → XP_017389470.1  RNA binding protein fox-1 homolog 1 isoform X19

  23. XM_017533878.2 → XP_017389367.1  RNA binding protein fox-1 homolog 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Related
    ENSCCAP00000010727.1, ENSCCAT00000028124.1

  24. XM_017533870.2 → XP_017389359.1  RNA binding protein fox-1 homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (4) summary
    PHA03193
    Location:84 → 148
    PHA03193; tegument protein VP11/12; Provisional
    COG0724
    Location:138 → 238
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:155 → 230
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:292 → 379
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  25. XM_017533887.2 → XP_017389376.1  RNA binding protein fox-1 homolog 1 isoform X6

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (4) summary
    PHA03193
    Location:84 → 148
    PHA03193; tegument protein VP11/12; Provisional
    COG0724
    Location:138 → 238
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:155 → 230
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:291 → 378
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  26. XM_037740365.1 → XP_037596293.1  RNA binding protein fox-1 homolog 1 isoform X37

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    pfam12414
    Location:291 → 377
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:155 → 230
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:50 → 215
    Agg_substance; LPXTG-anchored aggregation substance

  27. XM_037740322.1 → XP_037596250.1  RNA binding protein fox-1 homolog 1 isoform X21

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    pfam12414
    Location:247 → 334
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:110 → 185
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    NF033875
    Location:4 → 170
    Agg_substance; LPXTG-anchored aggregation substance

  28. XM_017534065.2 → XP_017389554.1  RNA binding protein fox-1 homolog 1 isoform X33

    UniProtKB/TrEMBL
    A0A2K5Q446

  29. XM_017533989.2 → XP_017389478.1  RNA binding protein fox-1 homolog 1 isoform X20

    UniProtKB/TrEMBL
    A0A2K5Q440, A0A2K5Q446
    Related
    ENSCCAP00000010658.1, ENSCCAT00000028054.1

  30. XM_017534025.2 → XP_017389514.1  RNA binding protein fox-1 homolog 1 isoform X25

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (4) summary
    PHA03193
    Location:65 → 132
    PHA03193; tegument protein VP11/12; Provisional
    COG0724
    Location:120 → 171
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam12414
    Location:242 → 329
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl17169
    Location:137 → 176
    RRM_SF; RNA recognition motif (RRM) superfamily

  31. XM_017533902.2 → XP_017389391.1  RNA binding protein fox-1 homolog 1 isoform X8

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (4) summary
    PHA03193
    Location:65 → 132
    PHA03193; tegument protein VP11/12; Provisional
    COG0724
    Location:120 → 220
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:137 → 212
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:273 → 360
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  32. XM_017534073.2 → XP_017389562.1  RNA binding protein fox-1 homolog 1 isoform X34

    UniProtKB/TrEMBL
    A0A2K5Q446

  33. XM_017534080.2 → XP_017389569.1  RNA binding protein fox-1 homolog 1 isoform X36

    UniProtKB/TrEMBL
    A0A2K5Q4B4

  34. XM_017534052.2 → XP_017389541.1  RNA binding protein fox-1 homolog 1 isoform X31

    UniProtKB/TrEMBL
    A0A2K5Q4B4
    Conserved Domains (4) summary
    PHA03193
    Location:65 → 132
    PHA03193; tegument protein VP11/12; Provisional
    COG0724
    Location:120 → 220
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:137 → 212
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:273 → 360
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  35. XM_017534059.2 → XP_017389548.1  RNA binding protein fox-1 homolog 1 isoform X32

    UniProtKB/TrEMBL
    A0A2K5Q4B4
    Related
    ENSCCAP00000010722.1, ENSCCAT00000028118.1

  36. XM_017534000.2 → XP_017389489.1  RNA binding protein fox-1 homolog 1 isoform X22

    UniProtKB/TrEMBL
    A0A2K5Q446
    Related
    ENSCCAP00000010671.1, ENSCCAT00000028067.1

  37. XM_017534039.2 → XP_017389528.1  RNA binding protein fox-1 homolog 1 isoform X29

    UniProtKB/TrEMBL
    A0A2K5Q4B6
    Conserved Domains (3) summary
    PRK03427
    Location:4 → 102
    PRK03427; cell division protein ZipA; Provisional
    pfam12414
    Location:234 → 321
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:97 → 172
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  38. XM_017533955.2 → XP_017389444.1  RNA binding protein fox-1 homolog 1 isoform X16

    UniProtKB/TrEMBL
    A0A2K5Q4B6

  39. XM_037740371.1 → XP_037596299.1  RNA binding protein fox-1 homolog 1 isoform X38

    UniProtKB/TrEMBL
    A0A2K5Q446
    Conserved Domains (3) summary
    PRK03427
    Location:63 → 161
    PRK03427; cell division protein ZipA; Provisional
    pfam12414
    Location:234 → 323
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cl17169
    Location:156 → 195
    RRM_SF; RNA recognition motif (RRM) superfamily

  40. XM_017533975.2 → XP_017389464.1  RNA binding protein fox-1 homolog 1 isoform X17

Nucleotide Protein
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