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tspan4a tetraspanin 4a [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108234742, updated on 10-Apr-2024

Summary

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Gene symbol
tspan4a
Gene description
tetraspanin 4a
See related
EnsemblRapid:ENSKMAG00010005705
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Also known as
tspan4
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
10
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG15 NC_051444.1 (24526670..24716301)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094268.1 (1323807..1513394)

Linkage Group LG15 - NC_051444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108234754 Neighboring gene transaldolase 1 Neighboring gene uncharacterized LOC108234743 Neighboring gene damage-specific DNA binding protein 1 Neighboring gene transmembrane protein 138 Neighboring gene cilia and flagella associated protein 70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-4a
Names
tetraspanin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051444.1 Reference ASM164957v2 Primary Assembly

    Range
    24526670..24716301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017414156.3 → XP_017269645.1  tetraspanin-4a isoform X4

    UniProtKB/TrEMBL
    A0A3Q2ZH13
    Conserved Domains (2) summary
    cd03165
    Location:105 → 202
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:9 → 226
    Tetraspannin; Tetraspanin family

  2. XM_037979990.1 → XP_037835918.1  tetraspanin-4a isoform X2

    Related
    ENSKMAP00010011705.1, ENSKMAT00010012281.1
    Conserved Domains (2) summary
    cd03165
    Location:129 → 226
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:33 → 250
    Tetraspannin; Tetraspanin family

  3. XM_017414155.3 → XP_017269644.1  tetraspanin-4a isoform X1

  4. XM_025005536.2 → XP_024861304.1  tetraspanin-4a isoform X3

    Related
    ENSKMAP00010011695.1, ENSKMAT00010012272.1
    Conserved Domains (2) summary
    cd03165
    Location:114 → 211
    NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    pfam00335
    Location:18 → 235
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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