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ZKSCAN8 zinc finger with KRAB and SCAN domains 8 [ Miniopterus natalensis ]

Gene ID: 107542819, updated on 30-Mar-2024

Summary

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Gene symbol
ZKSCAN8
Gene description
zinc finger with KRAB and SCAN domains 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Miniopterus natalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Miniopteridae; Miniopterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Mnat.v1 (GCF_001595765.1) Unplaced Scaffold NW_015504806.1 (219481..242268)

NW_015504806.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene putative olfactory receptor 2W6 Neighboring gene zinc finger protein with KRAB and SCAN domains 4-like Neighboring gene NFKB activating protein like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015504806.1 Unplaced Scaffold Reference Mnat.v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Miniopterus natalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnat.v1

Genomic

  1. NW_015504806.1 Reference Mnat.v1

    Range
    219481..242268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016220278.1 → XP_016075764.1  zinc finger protein with KRAB and SCAN domains 8 isoform X2

    Conserved Domains (6) summary
    smart00431
    Location:45 → 157
    SCAN; leucine rich region
    COG5048
    Location:398 → 459
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:402 → 422
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:428 → 450
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:45 → 133
    SCAN; SCAN domain
    pfam13465
    Location:442 → 467
    zf-H2C2_2; Zinc-finger double domain

  2. XM_016220279.1 → XP_016075765.1  zinc finger protein with KRAB and SCAN domains 8 isoform X3

    Conserved Domains (6) summary
    smart00431
    Location:45 → 157
    SCAN; leucine rich region
    COG5048
    Location:342 → 726
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:598 → 618
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:428 → 450
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:45 → 133
    SCAN; SCAN domain
    pfam13465
    Location:442 → 467
    zf-H2C2_2; Zinc-finger double domain

  3. XM_016220277.1 → XP_016075763.1  zinc finger protein with KRAB and SCAN domains 8 isoform X1

    Conserved Domains (7) summary
    smart00431
    Location:47 → 159
    SCAN; leucine rich region
    cd07765
    Location:219 → 257
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:314 → 563
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:435 → 455
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:321 → 343
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:47 → 134
    SCAN; SCAN domain
    pfam13465
    Location:504 → 527
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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