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chaf1a chromatin assembly factor 1, subunit A (p150) [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107393359, updated on 14-Mar-2024

Summary

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Gene symbol
chaf1a
Gene description
chromatin assembly factor 1, subunit A (p150)
See related
Ensembl:ENSNFUG00015009179
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539929.1 (29689497..29713461)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr17 NC_029665.1 (33646887..33671663)

NW_026539929.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107393356 Neighboring gene secretory carrier membrane protein 4 Neighboring gene UBX domain protein 6 Neighboring gene UDP-N-acetylglucosamine pyrophosphorylase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAF-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromatin assembly factor 1 subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539929.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    29689497..29713461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015971651.2 → XP_015827137.1  chromatin assembly factor 1 subunit A

    UniProtKB/TrEMBL
    A0A1A8AXK2, A0A1A8V2F2
    Related
    ENSNFUP00015019056.1
    Conserved Domains (4) summary
    pfam15557
    Location:23 → 155
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA
    pfam11600
    Location:265 → 410
    CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
    pfam12253
    Location:486 → 529
    CAF1A; Chromatin assembly factor 1 subunit A
    pfam15539
    Location:596 → 843
    CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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