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ITGB1 integrin subunit beta 1 [ Protobothrops mucrosquamatus ]

Gene ID: 107284025, updated on 14-Mar-2024

Summary

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Gene symbol
ITGB1
Gene description
integrin subunit beta 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Protobothrops mucrosquamatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Protobothrops
Orthologs
human mouse all
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Genomic context

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See ITGB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current P.Mucros_1.0 (GCF_001527695.2) Unplaced Scaffold NW_015386440.1 (2303307..2343139)

NW_015386440.1Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator Neighboring gene neuropilin 1 Neighboring gene uncharacterized LOC114922319 Neighboring gene uncharacterized LOC114922320

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015386440 Unplaced Scaffold Reference P.Mucros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-X3-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding involved in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fibronectin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protobothrops mucrosquamatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.Mucros_1.0 Primary Assembly

Genomic

  1. NW_015386440.1 Reference P.Mucros_1.0 Primary Assembly

    Range
    2303307..2343139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029283360.1 → XP_029139193.1  integrin beta-1 isoform X1

    Conserved Domains (3) summary
    smart00187
    Location:38 → 470
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:646 → 733
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:763 → 802
    Integrin_b_cyt; Integrin beta cytoplasmic domain

  2. XM_015812023.2 → XP_015667509.2  integrin beta-1 isoform X2

    Conserved Domains (3) summary
    smart00187
    Location:38 → 470
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:646 → 733
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:763 → 801
    Integrin_b_cyt; Integrin beta cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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