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DTX4 deltex E3 ubiquitin ligase 4 [ Parus major (Great Tit) ]

Gene ID: 107206422, updated on 3-Aug-2024

Summary

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Gene symbol
DTX4
Gene description
deltex E3 ubiquitin ligase 4
See related
Ensembl:ENSPMJG00000006392
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Parus
Orthologs
human mouse all
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Genomic context

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See DTX4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Parus_major1.1 (GCF_001522545.3) 5 NC_031774.1 (6257517..6263556, complement)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 5 NC_029274.1 (6257517..6263556, complement)

Chromosome 5 - NC_031774.1Genomic Context describing neighboring genes Neighboring gene INSC spindle orientation adaptor protein Neighboring gene uncharacterized LOC107205316 Neighboring gene macrophage expressed 1 Neighboring gene ciliary neurotrophic factor Neighboring gene ZFP91 zinc finger protein, atypical E3 ubiquitin ligase Neighboring gene leupaxin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase DTX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Parus major Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031774.1 Reference Parus_major1.1 Primary Assembly

    Range
    6257517..6263556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015632263.1 → XP_015487749.1  E3 ubiquitin-protein ligase DTX4

    Related
    ENSPMJP00000007765.1, ENSPMJT00000010695.1
    Conserved Domains (3) summary
    cd09633
    Location:367 → 499
    Deltex_C; Domain found at the C-terminus of deltex-like
    cd00162
    Location:299 → 360
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam02825
    Location:1 → 38
    WWE; WWE domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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