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Clba1 clathrin binding box of aftiphilin containing 1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107151113, updated on 1-Aug-2024

Summary

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Gene symbol
Clba1
Gene description
clathrin binding box of aftiphilin containing 1
See related
Ensembl:ENSMMMG00000005300
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999900.1 (68354003..68366647)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351211.1 (68354318..68361659)

NW_025999900.1Genomic Context describing neighboring genes Neighboring gene phospholipase D family member 4 Neighboring gene AHNAK nucleoprotein 2 Neighboring gene cell division cycle associated 4 Neighboring gene G protein-coupled receptor 132 Neighboring gene uncharacterized LOC125615385 Neighboring gene jagged canonical Notch ligand 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein CLBA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999900.1 Reference marMar

    Range
    68354003..68366647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048799492.1 → XP_048655449.1  uncharacterized protein CLBA1 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7ZYL7

  2. XM_015496358.2 → XP_015351844.1  uncharacterized protein CLBA1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6EPG8
    Related
    ENSMMMP00000005908.1
    Conserved Domains (1) summary
    pfam15045
    Location:193 → 272
    Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

RNA

  1. XR_007346050.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases