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Synj1 synaptojanin 1 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107136436, updated on 1-Aug-2024

Summary

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Gene symbol
Synj1
Gene description
synaptojanin 1
See related
Ensembl:ENSMMMG00000000553
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999968.1 (52989376..53072770, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351214.1 (52990188..53072742, complement)

NW_025999968.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999968.1 Reference marMar

    Range
    52989376..53072770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048803582.1 → XP_048659539.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7A6

  2. XM_048803583.1 → XP_048659540.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7K1

  3. XM_048803579.1 → XP_048659536.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A7P6

  4. XM_048803574.1 → XP_048659531.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A667

  5. XM_015478697.2 → XP_015334183.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ7A9U2
    Conserved Domains (3) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_048803576.1 → XP_048659533.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A666

  7. XM_048803581.1 → XP_048659538.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6U0

  8. XM_048803580.1 → XP_048659537.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A7N2

  9. XM_048803577.1 → XP_048659534.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6Y2

  10. XM_048803578.1 → XP_048659535.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6K6

  11. XM_048803573.1 → XP_048659530.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A674

  12. XM_048803602.1 → XP_048659559.1  synaptojanin-1 isoform X23

    UniProtKB/TrEMBL
    A0AAJ8A6B6

  13. XM_048803600.1 → XP_048659557.1  synaptojanin-1 isoform X18

    UniProtKB/TrEMBL
    A0AAJ8D7M8

  14. XM_048803596.1 → XP_048659553.1  synaptojanin-1 isoform X19

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6V1

  15. XM_048803599.1 → XP_048659556.1  synaptojanin-1 isoform X22

    UniProtKB/TrEMBL
    A0AAJ8D7C6

  16. XM_048803597.1 → XP_048659554.1  synaptojanin-1 isoform X20

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7B1

  17. XM_048803598.1 → XP_048659555.1  synaptojanin-1 isoform X21

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7K6

  18. XM_048803591.1 → XP_048659548.1  synaptojanin-1 isoform X16

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6Z1

  19. XM_048803589.1 → XP_048659546.1  synaptojanin-1 isoform X15

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A678

  20. XM_048803587.1 → XP_048659544.1  synaptojanin-1 isoform X14

    UniProtKB/TrEMBL
    A0A8C6EM32, A0A8C6EMG2

  21. XM_048803593.1 → XP_048659550.1  synaptojanin-1 isoform X17

    UniProtKB/TrEMBL
    A0AAJ8A7Q6

  22. XM_048803586.1 → XP_048659543.1  synaptojanin-1 isoform X13

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7M9

  23. XM_048803584.1 → XP_048659541.1  synaptojanin-1 isoform X12

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7M3

  24. XM_048803595.1 → XP_048659552.1  synaptojanin-1 isoform X18

    UniProtKB/TrEMBL
    A0AAJ8D7M8

  25. XM_048803592.1 → XP_048659549.1  synaptojanin-1 isoform X16

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8A6Z1

  26. XM_048803588.1 → XP_048659545.1  synaptojanin-1 isoform X14

    UniProtKB/TrEMBL
    A0A8C6EM32, A0A8C6EMG2

  27. XM_048803594.1 → XP_048659551.1  synaptojanin-1 isoform X17

    UniProtKB/TrEMBL
    A0AAJ8A7Q6

  28. XM_048803585.1 → XP_048659542.1  synaptojanin-1 isoform X12

    UniProtKB/TrEMBL
    A0A8C6EMG2, A0AAJ8D7M3
Nucleotide Protein
Heading Accession and Version

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