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trpt1 tRNA phosphotransferase 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107087601, updated on 14-Mar-2024

Summary

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Gene symbol
trpt1
Gene description
tRNA phosphotransferase 1
See related
Ensembl:ENSCVAG00000006318
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150463.1 (2439609..2441877)

NW_015150463.1Genomic Context describing neighboring genes Neighboring gene ribonuclease H2, subunit C Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene FERM domain containing kindlin 3b Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene leucine-rich repeat transmembrane protein FLRT1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150463.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA 2'-phosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150463.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    2439609..2441877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015379268.1 → XP_015234754.1  tRNA 2'-phosphotransferase 1

    UniProtKB/TrEMBL
    A0A3Q2DTM4
    Related
    ENSCVAP00000023168.1, ENSCVAT00000007431.1
    Conserved Domains (1) summary
    pfam01885
    Location:18 → 190
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family
Nucleotide Protein
Heading Accession and Version

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