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cpeb2 cytoplasmic polyadenylation element binding protein 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106954451, updated on 18-Sep-2024

Summary

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Gene symbol
cpeb2
Gene description
cytoplasmic polyadenylation element binding protein 2
See related
Ensembl:ENSPLAG00000006615
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See cpeb2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113273.1 (224760..250588, complement)

NW_015113273.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 5 Neighboring gene coiled-coil and C2 domain containing 2A Neighboring gene C1q and TNF related 7 Neighboring gene neuron-derived neurotrophic factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113273.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113273.1 Reference P_latipinna-1.0

    Range
    224760..250588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015043955.1 → XP_014899441.1  cytoplasmic polyadenylation element-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3B3VB94
    Related
    ENSPLAP00000022227.1, ENSPLAT00000008970.1
    Conserved Domains (4) summary
    COG0724
    Location:478 → 644
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:482 → 573
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:590 → 670
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:665 → 726
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  2. XM_015043954.1 → XP_014899440.1  cytoplasmic polyadenylation element-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3VB94
    Conserved Domains (4) summary
    COG0724
    Location:486 → 652
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:490 → 581
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:598 → 678
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:673 → 734
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  3. XM_015043957.1 → XP_014899443.1  cytoplasmic polyadenylation element-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3B3VB94
    Conserved Domains (4) summary
    COG0724
    Location:461 → 627
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:465 → 556
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:573 → 653
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:648 → 709
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  4. XM_015043956.1 → XP_014899442.1  cytoplasmic polyadenylation element-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3B3VB94
    Conserved Domains (4) summary
    COG0724
    Location:469 → 635
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:473 → 564
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:581 → 661
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:656 → 717
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
Nucleotide Protein
Heading Accession and Version

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