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OGG1 8-oxoguanine DNA glycosylase [ Calidris pugnax (ruff) ]

Gene ID: 106890750, updated on 3-Aug-2024

Summary

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Gene symbol
OGG1
Gene description
8-oxoguanine DNA glycosylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090880.1 (11108829..11110707, complement)

NW_015090880.1Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 3 Neighboring gene calcium/calmodulin dependent protein kinase I Neighboring gene bromodomain and PHD finger containing 1 Neighboring gene peregrin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090880.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-glycosylase/DNA lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090880.1 Reference ASM143184v1

    Range
    11108829..11110707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014946741.1 → XP_014802227.1  N-glycosylase/DNA lyase isoform X2

    Conserved Domains (3) summary
    TIGR00588
    Location:14 → 315
    ogg; 8-oxoguanine DNA-glycosylase (ogg)
    cd00056
    Location:132 → 308
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    pfam07934
    Location:16 → 134
    OGG_N; 8-oxoguanine DNA glycosylase, N-terminal domain

  2. XM_014946740.1 → XP_014802226.1  N-glycosylase/DNA lyase isoform X1

    Conserved Domains (3) summary
    TIGR00588
    Location:14 → 316
    ogg; 8-oxoguanine DNA-glycosylase (ogg)
    cd00056
    Location:133 → 309
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    pfam07934
    Location:16 → 135
    OGG_N; 8-oxoguanine DNA glycosylase, N-terminal domain
Nucleotide Protein
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