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ZSCAN29 zinc finger and SCAN domain containing 29 [ Equus asinus (ass) ]

Gene ID: 106835023, updated on 13-Mar-2024

Summary

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Gene symbol
ZSCAN29
Gene description
zinc finger and SCAN domain containing 29
See related
Ensembl:ENSEASG00005011109
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ZSCAN29 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 2 NC_052178.1 (190319568..190331702)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637989.1 (2677479..2689460)

Chromosome 2 - NC_052178.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 1A Neighboring gene tumor protein p53 binding protein 1 Neighboring gene tubulin gamma complex component 4 Neighboring gene N6-Methyl-AMP deaminase Neighboring gene uncharacterized LOC123282977 Neighboring gene leucine carboxyl methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052178.1 Reference ASM1607732v2

    Range
    190319568..190331702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014847117.2 → XP_014702603.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A8C4PMG5
    Conserved Domains (7) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:630 → 836
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:680 → 700
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:790 → 812
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam13465
    Location:748 → 773
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:407 → 488
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. XM_014847118.2 → XP_014702604.1  zinc finger and SCAN domain-containing protein 29 isoform X2

    UniProtKB/TrEMBL
    A0A8C4LUG0
    Related
    ENSEASP00005016016.2, ENSEAST00005017411.2
    Conserved Domains (8) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:601 → 807
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:651 → 671
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:761 → 783
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam13465
    Location:719 → 744
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:378 → 459
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl23961
    Location:125 → 163
    DUF2106; Predicted membrane protein (DUF2106)

  3. XM_044765050.1 → XP_044620985.1  zinc finger and SCAN domain-containing protein 29 isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:574 → 780
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:624 → 644
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02605
    Location:14 → 51
    SCAN; SCAN oligomerization domain
    cl23759
    Location:354 → 419
    GT1; myb-like, SANT family

  4. XM_044765051.1 → XP_044620986.1  zinc finger and SCAN domain-containing protein 29 isoform X5

    Conserved Domains (4) summary
    COG5048
    Location:545 → 751
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:595 → 615
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02605
    Location:14 → 50
    SCAN; SCAN oligomerization domain
    cl23759
    Location:325 → 390
    GT1; myb-like, SANT family

  5. XM_014847119.2 → XP_014702605.1  zinc finger and SCAN domain-containing protein 29 isoform X4

    Conserved Domains (7) summary
    COG5048
    Location:552 → 758
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:602 → 622
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:712 → 734
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:670 → 695
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:329 → 410
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02605
    Location:14 → 30
    SCAN; SCAN oligomerization domain
    cl23961
    Location:76 → 114
    DUF2106; Predicted membrane protein (DUF2106)

  6. XM_014847121.2 → XP_014702607.1  zinc finger and SCAN domain-containing protein 29 isoform X7

    Conserved Domains (7) summary
    COG5048
    Location:523 → 729
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:573 → 593
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:683 → 705
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:641 → 666
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:300 → 381
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02605
    Location:14 → 30
    SCAN; SCAN oligomerization domain
    cl23961
    Location:47 → 85
    DUF2106; Predicted membrane protein (DUF2106)

  7. XM_014847115.2 → XP_014702601.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A8C4PMG5
    Related
    ENSEASP00005016019.2, ENSEAST00005017414.2
    Conserved Domains (7) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:630 → 836
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:680 → 700
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:790 → 812
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam13465
    Location:748 → 773
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:407 → 488
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  8. XM_014847116.2 → XP_014702602.1  zinc finger and SCAN domain-containing protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A8C4PMG5
    Conserved Domains (7) summary
    smart00431
    Location:14 → 124
    SCAN; leucine rich region
    COG5048
    Location:630 → 836
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:680 → 700
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:790 → 812
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14 → 102
    SCAN; SCAN domain
    pfam13465
    Location:748 → 773
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:407 → 488
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  9. XM_014847120.2 → XP_014702606.1  zinc finger and SCAN domain-containing protein 29 isoform X6

    Conserved Domains (5) summary
    COG5048
    Location:538 → 744
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:588 → 608
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:698 → 720
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:656 → 681
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:315 → 396
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  10. XM_014847122.2 → XP_014702608.1  zinc finger and SCAN domain-containing protein 29 isoform X8

    Conserved Domains (5) summary
    COG5048
    Location:509 → 715
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:559 → 579
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:627 → 652
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:286 → 367
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  11. XM_044765052.1 → XP_044620987.1  zinc finger and SCAN domain-containing protein 29 isoform X9

    Conserved Domains (3) summary
    COG5048
    Location:481 → 687
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:531 → 551
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl23759
    Location:261 → 326
    GT1; myb-like, SANT family
Nucleotide Protein
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