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ZSCAN29 zinc finger and SCAN domain containing 29 [ Homo sapiens (human) ]

Gene ID: 146050, updated on 12-Oct-2019

Summary

Official Symbol
ZSCAN29provided by HGNC
Official Full Name
zinc finger and SCAN domain containing 29provided by HGNC
Primary source
HGNC:HGNC:26673
See related
Ensembl:ENSG00000140265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF690; Zfp690
Expression
Ubiquitous expression in testis (RPKM 6.9), lymph node (RPKM 3.9) and 25 other tissues See more
Orthologs

Genomic context

See ZSCAN29 in Genome Data Viewer
Location:
15q15.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (43358172..43371043, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (43650370..43663226, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene transglutaminase 7 Neighboring gene leucine carboxyl methyltransferase 2 Neighboring gene adenosine deaminase like Neighboring gene tubulin gamma complex associated protein 4 Neighboring gene RNA, 7SL, cytoplasmic 487, pseudogene Neighboring gene tumor protein p53 binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35867, MGC129894, MGC129895

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 29
Names
KOX31-like zinc finger protein
zinc finger protein 690

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001372080.1NP_001359009.1  zinc finger and SCAN domain-containing protein 29

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC018924
  2. NM_152455.3NP_689668.3  zinc finger and SCAN domain-containing protein 29

    See identical proteins and their annotated locations for NP_689668.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC018924, AF525399, BC017179, BC043612, DB183454, DB365228
    Consensus CDS
    CCDS10095.2
    UniProtKB/Swiss-Prot
    Q8IWY8
    UniProtKB/TrEMBL
    Q05BJ4, Q96AG1
    Related
    ENSP00000380174.2, ENST00000396976.6
    Conserved Domains (8) summary
    smart00431
    Location:14124
    SCAN; leucine rich region
    COG5048
    Location:630838
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:680700
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:790812
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:14102
    SCAN; SCAN domain
    pfam13465
    Location:748773
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:408489
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl23961
    Location:154192
    DUF2106; Predicted membrane protein (DUF2106)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    43358172..43371043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017021949.2XP_016877438.1  zinc finger and SCAN domain-containing protein 29 isoform X2

    Related
    ENSP00000454548.1, ENST00000570181.2

RNA

  1. XR_001751103.2 RNA Sequence

    Related
    ENST00000566849.5
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