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selenow1 selenoprotein W, 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106563412, updated on 13-Mar-2024

Summary

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Gene symbol
selenow1
Gene description
selenoprotein W, 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
sepw1; selenow
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa11
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa11 NC_059452.1 (92137926..92139496, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa11 NC_027310.1 (77486425..77488363, complement)

Chromosome ssa11 - NC_059452.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 45B Neighboring gene guanine nucleotide binding protein (G protein), gamma 8 Neighboring gene EH-domain containing 2a Neighboring gene zinc finger BED-type containing 4-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Micallef G, et al. Mar Biotechnol (NY), 2012 Oct. PMID 22527268

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to selenium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenoprotein W, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059452.1 Reference Ssal_v3.1

    Range
    92137926..92139496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014128960.2 → XP_013984435.1  selenoprotein W, 1

    UniProtKB/TrEMBL
    A0A1S3L0D7
    Conserved Domains (1) summary
    TIGR02174
    Location:48 → 121
    CXXU_selWTH; selT/selW/selH selenoprotein domain

  2. XM_014128961.2 → XP_013984436.1  selenoprotein W, 1

    UniProtKB/TrEMBL
    A0A1S3L0D7
    Conserved Domains (1) summary
    TIGR02174
    Location:48 → 121
    CXXU_selWTH; selT/selW/selH selenoprotein domain
Nucleotide Protein
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