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SDK2 sidekick cell adhesion molecule 2 [ Thamnophis sirtalis ]

Gene ID: 106553016, updated on 13-Mar-2024

Summary

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Gene symbol
SDK2
Gene description
sidekick cell adhesion molecule 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013659833.1 (24456..153676, complement)

NW_013659833.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013659833.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein sidekick-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013659833.1 Reference Thamnophis_sirtalis-6.0

    Range
    24456..153676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014071433.1 → XP_013926908.1  protein sidekick-2

    UniProtKB/TrEMBL
    A0A6I9YQV1
    Conserved Domains (7) summary
    cd00096
    Location:332 → 400
    Ig; Immunoglobulin domain
    smart00408
    Location:239 → 292
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:508 → 592
    IG_like; Immunoglobulin like
    cd00063
    Location:1307 → 1400
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:408 → 498
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:1417 → 1465
    fn3; Fibronectin type III domain
    cl11960
    Location:422 → 498
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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