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Chsy3 chondroitin sulfate synthase 3 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105992557, updated on 13-Mar-2024

Summary

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Gene symbol
Chsy3
Gene description
chondroitin sulfate synthase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Chsy3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267301.1 (730219..1033289)

NW_012267301.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C8orf59 homolog Neighboring gene membrane integral NOTCH2 associated receptor 2 Neighboring gene ubiquitin-conjugating enzyme E2 L3 pseudogene Neighboring gene ras-related protein Rab-5A pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267301.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267301.1 Reference Dord_2.0

    Range
    730219..1033289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013025480.1 → XP_012880934.1  chondroitin sulfate synthase 3

    UniProtKB/TrEMBL
    A0A1S3FY19
    Conserved Domains (3) summary
    pfam05679
    Location:348 → 884
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl09930
    Location:61 → 120
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    cl21608
    Location:189 → 418
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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