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Rbm12b RNA binding motif protein 12B [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105982851, updated on 13-Mar-2024

Summary

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Gene symbol
Rbm12b
Gene description
RNA binding motif protein 12B
See related
Ensembl:ENSDORG00000024034
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267233.1 (16067259..16074386)

NW_012267233.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1 Neighboring gene transmembrane protein 67 Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267233.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267233.1 Reference Dord_2.0

    Range
    16067259..16074386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013012559.1 → XP_012868013.1  RNA-binding protein 12B

    See identical proteins and their annotated locations for XP_012868013.1

    UniProtKB/TrEMBL
    A0A1S3EUB0
    Related
    ENSDORP00000017602.1, ENSDORT00000023997.1
    Conserved Domains (8) summary
    COG0724
    Location:144 → 334
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:282 → 361
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:858 → 934
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    pfam04554
    Location:676 → 724
    Extensin_2; Extensin-like region
    pfam15240
    Location:661 → 802
    Pro-rich; Proline-rich
    cl17169
    Location:398 → 473
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_013012558.1 → XP_012868012.1  RNA-binding protein 12B

    See identical proteins and their annotated locations for XP_012868012.1

    UniProtKB/TrEMBL
    A0A1S3EUB0
    Conserved Domains (8) summary
    COG0724
    Location:144 → 334
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:282 → 361
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:858 → 934
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    pfam04554
    Location:676 → 724
    Extensin_2; Extensin-like region
    pfam15240
    Location:661 → 802
    Pro-rich; Proline-rich
    cl17169
    Location:398 → 473
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_013012560.1 → XP_012868014.1  RNA-binding protein 12B

    See identical proteins and their annotated locations for XP_012868014.1

    UniProtKB/TrEMBL
    A0A1S3EUB0
    Conserved Domains (8) summary
    COG0724
    Location:144 → 334
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12513
    Location:282 → 361
    RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12744
    Location:2 → 80
    RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12746
    Location:156 → 233
    RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12750
    Location:858 → 934
    RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins
    pfam04554
    Location:676 → 724
    Extensin_2; Extensin-like region
    pfam15240
    Location:661 → 802
    Pro-rich; Proline-rich
    cl17169
    Location:398 → 473
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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