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Cenpf centromere protein F [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104875129, updated on 12-Mar-2024

Summary

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Gene symbol
Cenpf
Gene description
centromere protein F
Locus tag
H920_13179
See related
Ensembl:ENSFDAG00000010520
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Cenpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900923.1 (6737736..6785730, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045970.1 (6634765..6682719, complement)

NW_022900923.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104875126 Neighboring gene U2 spliceosomal RNA Neighboring gene potassium two pore domain channel subfamily K member 2 Neighboring gene uncharacterized LOC104875128 Neighboring gene uncharacterized LOC104875130 Neighboring gene ubiquitin-conjugating enzyme E2 D3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metaphase chromosome alignment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of G2/M transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centromere protein F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900923.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    6737736..6785730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010642524.3 → XP_010640826.1  centromere protein F isoform X2

    UniProtKB/TrEMBL
    A0A091D4I3
    Conserved Domains (5) summary
    COG1196
    Location:421 → 1150
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:892 → 1649
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10473
    Location:2278 → 2417
    CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
    pfam10481
    Location:1 → 304
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:2665 → 2698
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1

  2. XM_010642522.3 → XP_010640824.1  centromere protein F isoform X1

    UniProtKB/TrEMBL
    A0A091D4I3
    Related
    ENSFDAP00000000204.1
    Conserved Domains (5) summary
    COG1196
    Location:421 → 1150
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:892 → 1649
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10473
    Location:2278 → 2417
    CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
    pfam10481
    Location:1 → 304
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:2814 → 2854
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1

  3. XM_010642526.3 → XP_010640828.1  centromere protein F isoform X3

    UniProtKB/TrEMBL
    A0A091D4I3
    Conserved Domains (4) summary
    COG1196
    Location:79 → 808
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:550 → 1307
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam10473
    Location:1936 → 2075
    CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
    pfam10490
    Location:2472 → 2512
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
Nucleotide Protein
Heading Accession and Version

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