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Ppp1r13b protein phosphatase 1 regulatory subunit 13B [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104850373, updated on 12-Mar-2024

Summary

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Gene symbol
Ppp1r13b
Gene description
protein phosphatase 1 regulatory subunit 13B
Locus tag
H920_16322
See related
Ensembl:ENSFDAG00000009869
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900933.1 (40659883..40720424, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046705.1 (1587537..1648078, complement)

NW_022900933.1Genomic Context describing neighboring genes Neighboring gene kinesin light chain 1 Neighboring gene zinc finger FYVE-type containing 21 Neighboring gene X-ray repair cross complementing 3 Neighboring gene ATP synthase membrane subunit j Neighboring gene tudor domain containing 9 Neighboring gene RD3 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables p53 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptosis-stimulating of p53 protein 1
Names
Apoptosis-stimulating of p53 protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900933.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    40659883..40720424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010607288.1 → XP_010605590.1  apoptosis-stimulating of p53 protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A091DHP4
    Related
    ENSFDAP00000018400.1, ENSFDAT00000013621.1
    Conserved Domains (5) summary
    cd00204
    Location:887 → 1010
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:893 → 979
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:893 → 919
    ANK; ANK repeat [structural motif]
    cl09111
    Location:214 → 324
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl17036
    Location:1023 → 1079
    SH3; Src Homology 3 domain superfamily

  2. XM_010607287.1 → XP_010605589.1  apoptosis-stimulating of p53 protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A091DHP4
    Conserved Domains (5) summary
    cd00204
    Location:922 → 1045
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:928 → 1014
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:928 → 954
    ANK; ANK repeat [structural motif]
    cl09111
    Location:214 → 324
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl17036
    Location:1058 → 1114
    SH3; Src Homology 3 domain superfamily

  3. XM_010607286.1 → XP_010605588.1  apoptosis-stimulating of p53 protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A091DHP4
    Conserved Domains (5) summary
    cd00204
    Location:927 → 1050
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:933 → 1019
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:933 → 959
    ANK; ANK repeat [structural motif]
    cl09111
    Location:214 → 324
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl17036
    Location:1063 → 1119
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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