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THBS1 thrombospondin 1 [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104621532, updated on 3-Aug-2024

Summary

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Gene symbol
THBS1
Gene description
thrombospondin 1
Locus tag
N335_09544
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Phaethontimorphae; Phaethontiformes; Phaethontidae; Phaethon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010542534.1 (94197..109919, complement)

NW_010542534.1Genomic Context describing neighboring genes Neighboring gene fibrous sheath interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010542534.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1
Names
Thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010542534.1 Reference ASM68728v1

    Range
    94197..109919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010288049.1 → XP_010286351.1  thrombospondin-1

    UniProtKB/TrEMBL
    A0A091TJ71
    Conserved Domains (10) summary
    smart00209
    Location:446 → 498
    TSP1; Thrombospondin type 1 repeats
    smart00210
    Location:29 → 229
    TSPN; Thrombospondin N-terminal -like domains
    sd00001
    Location:853 → 890
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:795 → 829
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:699 → 734
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00090
    Location:391 → 436
    TSP_1; Thrombospondin type 1 domain
    pfam00093
    Location:326 → 380
    VWC; von Willebrand factor type C domain
    pfam02412
    Location:854 → 890
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:980 → 1177
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:658 → 697
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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