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CACTIN cactin, spliceosome C complex subunit [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104617610, updated on 3-Aug-2024

Summary

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Gene symbol
CACTIN
Gene description
cactin, spliceosome C complex subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Phaethontimorphae; Phaethontiformes; Phaethontidae; Phaethon
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CACTIN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010526095.1 (3743..9505, complement)

NW_010526095.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010526095.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cactin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010526095.1 Reference ASM68728v1

    Range
    3743..9505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010282969.1 → XP_010281271.1  LOW QUALITY PROTEIN: cactin

    Conserved Domains (2) summary
    pfam09732
    Location:567 → 691
    CactinC_cactus; Cactus-binding C-terminus of cactin protein
    pfam10312
    Location:219 → 405
    Cactin_mid; Conserved mid region of cactin
Nucleotide Protein
Heading Accession and Version

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