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BPTF bromodomain PHD finger transcription factor [ Mesitornis unicolor (brown roatelo) ]

Gene ID: 104541051, updated on 3-Aug-2024

Summary

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Gene symbol
BPTF
Gene description
bromodomain PHD finger transcription factor
Locus tag
N332_11696
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesitornis unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Mesitornithiformes; Mesitornithidae; Mesitornis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM69576v1 (GCF_000695765.1) Unplaced Scaffold NW_010186039.1 (10867..44943, complement)

NW_010186039.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown open reading frame, human C17orf58

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010186039.1 Unplaced Scaffold Reference ASM69576v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NURF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleosome-remodeling factor subunit BPTF
Names
Nucleosome-remodeling factor subunit BPTF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesitornis unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69576v1

Genomic

  1. NW_010186039.1 Reference ASM69576v1

    Range
    10867..44943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010185014.1 → XP_010183316.1  nucleosome-remodeling factor subunit BPTF

    UniProtKB/TrEMBL
    A0A091S6R0
    Conserved Domains (5) summary
    cd05509
    Location:2633 → 2733
    Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
    cd15560
    Location:2571 → 2617
    PHD2_3_BPTF; PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
    pfam10252
    Location:1586 → 1635
    PP28; Casein kinase substrate phosphoprotein PP28
    pfam12361
    Location:98 → 311
    DBP; Duffy-antigen binding protein
    pfam14650
    Location:2048 → 2113
    FAM75; FAM75 family
Nucleotide Protein
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