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SP2 Sp2 transcription factor [ Tyto alba (common barn owl) ]

Gene ID: 104368143, updated on 3-Aug-2024

Summary

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Gene symbol
SP2
Gene description
Sp2 transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881274.1 (5142030..5154370, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009977066.1 (1713..6030)

NW_024881274.1Genomic Context describing neighboring genes Neighboring gene proline rich 15 like Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene uncharacterized LOC122152774 Neighboring gene Sp6 transcription factor Neighboring gene secernin 2 Neighboring gene leucine rich repeat containing 46

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881274.1 Reference T.alba_DEE_v4.0

    Range
    5142030..5154370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042787057.1 → XP_042642991.1  transcription factor Sp2 isoform X2

    Conserved Domains (3) summary
    smart00355
    Location:567 → 589
    ZnF_C2H2; zinc finger
    COG5048
    Location:505 → 569
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:509 → 531
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_042787056.1 → XP_042642990.1  transcription factor Sp2 isoform X1

    Conserved Domains (3) summary
    smart00355
    Location:621 → 643
    ZnF_C2H2; zinc finger
    COG5048
    Location:559 → 623
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:563 → 585
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_042787058.1 → XP_042642992.1  transcription factor Sp2 isoform X2

    Conserved Domains (3) summary
    smart00355
    Location:567 → 589
    ZnF_C2H2; zinc finger
    COG5048
    Location:505 → 569
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:509 → 531
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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