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MEF2C myocyte enhancer factor 2C [ Charadrius vociferus (killdeer) ]

Gene ID: 104288101, updated on 3-Aug-2024

Summary

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Gene symbol
MEF2C
Gene description
myocyte enhancer factor 2C
Locus tag
N301_05743
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648822.1 (1974694..2098199)

NW_009648822.1Genomic Context describing neighboring genes Neighboring gene metallo-beta-lactamase domain containing 2 Neighboring gene centrin 3 Neighboring gene transmembrane protein 161B Neighboring gene cyclin H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009648822.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocyte-specific enhancer factor 2C
Names
Myocyte-specific enhancer factor 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009648822.1 Reference ASM70802v2

    Range
    1974694..2098199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009886854.1 → XP_009885156.1  myocyte-specific enhancer factor 2C isoform X2

    See identical proteins and their annotated locations for XP_009885156.1

    UniProtKB/TrEMBL
    A0A0A0AML7
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  2. XM_009886853.1 → XP_009885155.1  myocyte-specific enhancer factor 2C isoform X1

    See identical proteins and their annotated locations for XP_009885155.1

    UniProtKB/TrEMBL
    A0A0A0AML7
    Conserved Domains (3) summary
    COG5068
    Location:1 → 263
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:117 → 170
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  3. XM_009886855.1 → XP_009885157.1  myocyte-specific enhancer factor 2C isoform X3

    See identical proteins and their annotated locations for XP_009885157.1

    UniProtKB/TrEMBL
    A0A0A0AML7
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 150
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  4. XM_009886859.1 → XP_009885161.1  myocyte-specific enhancer factor 2C isoform X5

    See identical proteins and their annotated locations for XP_009885161.1

    UniProtKB/TrEMBL
    A0A0A0AML7
    Conserved Domains (1) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  5. XM_009886856.1 → XP_009885158.1  myocyte-specific enhancer factor 2C isoform X4

    See identical proteins and their annotated locations for XP_009885158.1

    UniProtKB/TrEMBL
    A0A0A0AML7
    Conserved Domains (2) summary
    COG5068
    Location:1 → 229
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
Nucleotide Protein
Heading Accession and Version

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