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UPK1B uroplakin 1B [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104049849, updated on 3-Aug-2024

Summary

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Gene symbol
UPK1B
Gene description
uroplakin 1B
Locus tag
N336_01327
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 1 NC_087513.1 (89558098..89570213, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009168188.1 (19650..25023)

Chromosome 1 - NC_087513.1Genomic Context describing neighboring genes Neighboring gene galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 Neighboring gene Rho GTPase activating protein 31 Neighboring gene uncharacterized LOC135315808 Neighboring gene testis expressed 55 Neighboring gene immunoglobulin superfamily member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uroplakin-1b
Names
Uroplakin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087513.1 Reference bPhaCar2.1

    Range
    89558098..89570213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064466209.1 → XP_064322279.1  uroplakin-1b

    UniProtKB/TrEMBL
    A0A093TIW0

  2. XM_009510608.2 → XP_009508903.1  uroplakin-1b

    UniProtKB/TrEMBL
    A0A093TIW0
    Conserved Domains (2) summary
    cd03156
    Location:118 → 230
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:11 → 257
    Tetraspannin; Tetraspanin family

  3. XM_064466200.1 → XP_064322270.1  uroplakin-1b

    UniProtKB/TrEMBL
    A0A093TIW0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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