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TBPL1 TATA-box binding protein like 1 [ Serinus canaria (Common canary) ]

Gene ID: 103820547, updated on 12-Aug-2024

Summary

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Gene symbol
TBPL1
Gene description
TATA-box binding protein like 1
See related
EnsemblRapid:ENSSCAG00000017938
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 3 NC_066316.1 (57813346..57826635, complement)

Chromosome 3 - NC_066316.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase Sgk1 Neighboring gene solute carrier family 2 member 12 Neighboring gene transcription factor 21 Neighboring gene EYA transcriptional coactivator and phosphatase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066316.1 Chromosome 3 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066316.1 Reference serCan2020 Primary Assembly

    Range
    57813346..57826635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030236043.2 → XP_030091903.1  TATA box-binding protein-like 1

    UniProtKB/TrEMBL
    A0A8C9NC34
    Related
    ENSSCAP00000030230.1, ENSSCAT00000034477.1
    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

  2. XM_018919903.3 → XP_018775448.2  TATA box-binding protein-like 1

    UniProtKB/TrEMBL
    A0A8C9NC34
    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...
Nucleotide Protein
Heading Accession and Version

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