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NPAS2 neuronal PAS domain protein 2 [ Serinus canaria (Common canary) ]

Gene ID: 103812640, updated on 12-Aug-2024

Summary

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Gene symbol
NPAS2
Gene description
neuronal PAS domain protein 2
See related
EnsemblRapid:ENSSCAG00000000024
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 1 NC_066313.1 (84593021..84696022)

Chromosome 1 - NC_066313.1Genomic Context describing neighboring genes Neighboring gene histone H2A-beta, sperm-like Neighboring gene phosducin like 3 Neighboring gene ribosomal protein L31 Neighboring gene TBC1 domain family member 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066313.1 Chromosome 1 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066313.1 Reference serCan2020 Primary Assembly

    Range
    84593021..84696022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050971510.1 → XP_050827467.1  neuronal PAS domain-containing protein 2

    UniProtKB/TrEMBL
    A0A8C9L159
    Related
    ENSSCAP00000000029.2, ENSSCAT00000000038.2
Nucleotide Protein
Heading Accession and Version

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