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Rbm33 RNA binding motif protein 33 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745340, updated on 11-Mar-2024

Summary

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Gene symbol
Rbm33
Gene description
RNA binding motif protein 33
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350120.1 (4600819..4701094)

NW_008350120.1Genomic Context describing neighboring genes Neighboring gene engrailed homeobox 2 Neighboring gene canopy FGF signaling regulator 1 Neighboring gene sonic hedgehog signaling molecule Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008350120 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008350120.1 Reference S.galili_v1.0 Primary Assembly

    Range
    4600819..4701094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017801706.2 → XP_017657195.1  RNA-binding protein 33 isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:451 → 824
    PHA03247; large tegument protein UL36; Provisional
    PRK14086
    Location:455 → 617
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:1168 → 1233
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_017801707.2 → XP_017657196.1  RNA-binding protein 33 isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:451 → 824
    PHA03247; large tegument protein UL36; Provisional
    PRK14086
    Location:455 → 617
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:1167 → 1232
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_017801709.2 → XP_017657198.1  RNA-binding protein 33 isoform X4

    Conserved Domains (3) summary
    PHA03247
    Location:451 → 824
    PHA03247; large tegument protein UL36; Provisional
    PRK14086
    Location:455 → 617
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:1098 → 1163
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_017801708.2 → XP_017657197.1  RNA-binding protein 33 isoform X3

    Conserved Domains (4) summary
    PHA03247
    Location:411 → 784
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:15 → 201
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK14086
    Location:415 → 577
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:1128 → 1193
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_008847265.3 → XP_008845487.1  RNA-binding protein 33 isoform X5

    Conserved Domains (4) summary
    PHA03247
    Location:411 → 784
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:15 → 201
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK14086
    Location:415 → 577
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:1127 → 1192
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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