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Rbm33 RNA binding motif protein 33 [ Mus musculus (house mouse) ]

Gene ID: 381626, updated on 26-Sep-2022

Summary

Official Symbol
Rbm33provided by MGI
Official Full Name
RNA binding motif protein 33provided by MGI
Primary source
MGI:MGI:1919670
See related
Ensembl:ENSMUSG00000048271 AllianceGenome:MGI:1919670
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Prr8; 3200001K10Rik; 6430512A10Rik
Summary
Predicted to enable nucleic acid binding activity. Is expressed in head; limb; and trunk. Orthologous to human RBM33 (RNA binding motif protein 33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 22.3), CNS E14 (RPKM 16.3) and 28 other tissues See more
Orthologs
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Genomic context

See Rbm33 in Genome Data Viewer
Location:
5; 5 B1
Exon count:
19
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (28521817..28624242)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (28316836..28419244)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene canopy FGF signaling regulator 1 Neighboring gene predicted gene, 35524 Neighboring gene predicted gene, 35602 Neighboring gene RIKEN cDNA 9530036O11Rik Neighboring gene sonic hedgehog brain enhancer region in intron 2 Neighboring gene sonic hedgehog Neighboring gene sonic hedgehog floor plate enhancer 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
RNA-binding protein 33
Names
proline rich 8
proline-rich protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028234.1NP_082510.1  RNA-binding protein 33

    See identical proteins and their annotated locations for NP_082510.1

    Status: PROVISIONAL

    Source sequence(s)
    AC134530, AK014289, AK153360, BB637766, CB528202, CN703034
    Consensus CDS
    CCDS51448.1
    UniProtKB/Swiss-Prot
    Q8C5J6, Q9CXK9
    Related
    ENSMUSP00000062449.7, ENSMUST00000059644.13
    Conserved Domains (1) summary
    cd00590
    Location:11611226
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    28521817..28624242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535733.5XP_006535796.1  RNA-binding protein 33 isoform X1

    Conserved Domains (5) summary
    PHA03418
    Location:451491
    PHA03418; hypothetical E4 protein; Provisional
    COG5271
    Location:15238
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK09510
    Location:802873
    tolA; cell envelope integrity inner membrane protein TolA; Provisional
    PRK14086
    Location:456618
    dnaA; chromosomal replication initiator protein DnaA
    cd00590
    Location:11601225
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_006535734.5XP_006535797.1  RNA-binding protein 33 isoform X2

    UniProtKB/TrEMBL
    D3Z5I9
    Related
    ENSMUSP00000110534.2, ENSMUST00000114884.8
    Conserved Domains (6) summary
    PHA03418
    Location:411451
    PHA03418; hypothetical E4 protein; Provisional
    PHA03247
    Location:398688
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:15200
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK09510
    Location:762833
    tolA; cell envelope integrity inner membrane protein TolA; Provisional
    cd00590
    Location:11211186
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam09770
    Location:417538
    PAT1; Topoisomerase II-associated protein PAT1
  3. XM_006535735.5XP_006535798.1  RNA-binding protein 33 isoform X3

    Conserved Domains (6) summary
    PHA03418
    Location:411451
    PHA03418; hypothetical E4 protein; Provisional
    PHA03247
    Location:398688
    PHA03247; large tegument protein UL36; Provisional
    COG5271
    Location:15200
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    PRK09510
    Location:762833
    tolA; cell envelope integrity inner membrane protein TolA; Provisional
    cd00590
    Location:11201185
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam09770
    Location:417538
    PAT1; Topoisomerase II-associated protein PAT1