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ITGB1 integrin subunit beta 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103656511, updated on 11-Mar-2024

Summary

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Gene symbol
ITGB1
Gene description
integrin subunit beta 1
See related
Ensembl:ENSUMAG00000016082
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024425675.1 (4394629..4437632)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007930705.1 (4777325..4803838, complement)

NW_024425675.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106294 Neighboring gene uncharacterized LOC121106295 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene coiled-coil domain containing 7 Neighboring gene 60S ribosome subunit biogenesis protein NIP7 homolog Neighboring gene 60S ribosomal protein L7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-X3-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding involved in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fibronectin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024425675.1 Reference ASM1731132v1 Primary Assembly

    Range
    4394629..4437632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040645271.1 → XP_040501205.1  integrin beta-1

    UniProtKB/TrEMBL
    A0A384BHU1
    Conserved Domains (4) summary
    smart00187
    Location:34 → 464
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:640 → 727
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:755 → 795
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    NF033759
    Location:472 → 650
    exchanger_TraA; outer membrane exchange protein TraA
Nucleotide Protein
Heading Accession and Version

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