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HBP1 HMG-box transcription factor 1 [ Equus przewalskii (Przewalski's horse) ]

Gene ID: 103561715, updated on 11-Mar-2024

Summary

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Gene symbol
HBP1
Gene description
HMG-box transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus przewalskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Burgud (GCF_000696695.1) Unplaced Scaffold NW_007675379.1 (90445..119259)

NW_007675379.1Genomic Context describing neighboring genes Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene conserved oligomeric Golgi complex subunit 5 Neighboring gene uncharacterized LOC103561714

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007675379 unplaced scaffold reference Burgud Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus przewalskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Burgud Primary Assembly

Genomic

  1. NW_007675379.1 Reference Burgud Primary Assembly

    Range
    90445..119259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008536475.1 → XP_008534697.1  HMG box-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_008534697.1

    Conserved Domains (2) summary
    smart00536
    Location:264 → 390
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:483 → 554
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  2. XM_008536476.1 → XP_008534698.1  HMG box-containing protein 1 isoform X3

    Conserved Domains (2) summary
    smart00536
    Location:213 → 339
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:432 → 503
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  3. XM_008536473.1 → XP_008534695.1  HMG box-containing protein 1 isoform X1

    Conserved Domains (2) summary
    smart00536
    Location:274 → 400
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:493 → 564
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
Nucleotide Protein
Heading Accession and Version

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