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TRPC4 transient receptor potential cation channel subfamily C member 4 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103275733, updated on 11-Mar-2024

Summary

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Gene symbol
TRPC4
Gene description
transient receptor potential cation channel subfamily C member 4
See related
Ensembl:ENSTSYG00000004019
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007259749.1 (34827..209433)

NW_007259749.1Genomic Context describing neighboring genes Neighboring gene periostin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007259749 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007259749.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    34827..209433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008073127.1 → XP_008071318.1  short transient receptor potential channel 4 isoform X3

    UniProtKB/TrEMBL
    A0A1U7URE3
    Related
    ENSTSYP00000034308.1, ENSTSYT00000044353.1
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 754
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  2. XM_008073129.1 → XP_008071320.1  short transient receptor potential channel 4 isoform X5

    UniProtKB/TrEMBL
    A0A1U7UM94
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 729
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  3. XM_008073125.1 → XP_008071316.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    A0A1U7UZE9
    Related
    ENSTSYP00000023809.1, ENSTSYT00000027006.1
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 754
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  4. XM_008073126.1 → XP_008071317.1  short transient receptor potential channel 4 isoform X2

    UniProtKB/TrEMBL
    A0A1U7V0X2
    Related
    ENSTSYP00000003684.2, ENSTSYT00000004025.2
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  5. XM_008073128.1 → XP_008071319.1  short transient receptor potential channel 4 isoform X4

    UniProtKB/TrEMBL
    A0A1U7UGD0
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 749
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  6. XM_008073130.1 → XP_008071321.1  short transient receptor potential channel 4 isoform X6

    UniProtKB/TrEMBL
    A0A1U7UZF5
    Related
    ENSTSYP00000020484.1, ENSTSYT00000026763.1
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 684
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]

  7. XM_008073131.1 → XP_008071322.1  short transient receptor potential channel 4 isoform X7

    UniProtKB/TrEMBL
    A0A1U7V0X7
    Related
    ENSTSYP00000032905.1, ENSTSYT00000049659.1
    Conserved Domains (1) summary
    TIGR00870
    Location:17 → 576
    trp; transient-receptor-potential calcium channel protein
Nucleotide Protein
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