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STX5 syntaxin 5 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103255626, updated on 11-Mar-2024

Summary

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Gene symbol
STX5
Gene description
syntaxin 5
See related
Ensembl:ENSTSYG00000010903
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007232411.1 (139494..173363)

NW_007232411.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103255624 Neighboring gene WD repeat domain 74 Neighboring gene uncharacterized LOC103255628 Neighboring gene nuclear RNA export factor 1 Neighboring gene transmembrane protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007232411 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007232411.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    139494..173363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008053593.1 → XP_008051784.1  syntaxin-5 isoform X1

    UniProtKB/TrEMBL
    A0A1U7SV99
    Related
    ENSTSYP00000009998.2, ENSTSYT00000010909.2
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  2. XM_008053594.2 → XP_008051785.1  syntaxin-5 isoform X3

    UniProtKB/TrEMBL
    A0A1U7T1X3
    Conserved Domains (3) summary
    COG5325
    Location:110 → 266
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:208 → 280
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  3. XM_021710224.1 → XP_021565899.1  syntaxin-5 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0DNC3
    Conserved Domains (3) summary
    cd15844
    Location:266 → 344
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    cl26014
    Location:182 → 344
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
Nucleotide Protein
Heading Accession and Version

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