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PICALM phosphatidylinositol binding clathrin assembly protein [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103248165, updated on 11-Mar-2024

Summary

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Gene symbol
PICALM
Gene description
phosphatidylinositol binding clathrin assembly protein
See related
Ensembl:ENSCSAG00000003661
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666043.1 (48400453..48511604)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 1 NC_023642.1 (77214391..77325626, complement)

NW_023666043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103248162 Neighboring gene uncharacterized LOC119626601 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC103248164 Neighboring gene tricarboxylate transport protein, mitochondrial-like Neighboring gene rRNA-processing protein FCF1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666043.1 Reference Vero_WHO_p1.0

    Range
    48400453..48511604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038005384.1 → XP_037861312.1  phosphatidylinositol-binding clathrin assembly protein isoform X14

    Conserved Domains (1) summary
    pfam07651
    Location:1 → 231
    ANTH; ANTH domain

  2. XM_008020430.2 → XP_008018621.1  phosphatidylinositol-binding clathrin assembly protein isoform X22

    See identical proteins and their annotated locations for XP_008018621.1

    Conserved Domains (2) summary
    COG4223
    Location:217 → 315
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:1 → 231
    ANTH; ANTH domain

  3. XM_008020417.2 → XP_008018608.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

    See identical proteins and their annotated locations for XP_008018608.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  4. XM_008020420.2 → XP_008018611.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

    See identical proteins and their annotated locations for XP_008018611.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  5. XM_038005378.1 → XP_037861306.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  6. XM_038005379.1 → XP_037861307.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  7. XM_008020424.2 → XP_008018615.1  phosphatidylinositol-binding clathrin assembly protein isoform X13

    See identical proteins and their annotated locations for XP_008018615.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  8. XM_008020426.2 → XP_008018617.1  phosphatidylinositol-binding clathrin assembly protein isoform X16

    See identical proteins and their annotated locations for XP_008018617.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  9. XM_038005385.1 → XP_037861313.1  phosphatidylinositol-binding clathrin assembly protein isoform X20

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  10. XM_008020425.2 → XP_008018616.1  phosphatidylinositol-binding clathrin assembly protein isoform X15

    See identical proteins and their annotated locations for XP_008018616.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  11. XM_038005386.1 → XP_037861314.1  phosphatidylinositol-binding clathrin assembly protein isoform X21

    Conserved Domains (2) summary
    COG4223
    Location:135 → 233
    COG4223; Uncharacterized conserved protein [Function unknown]
    cl02544
    Location:20 → 149
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  12. XM_038005383.1 → XP_037861311.1  phosphatidylinositol-binding clathrin assembly protein isoform X12

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  13. XM_008020423.2 → XP_008018614.1  phosphatidylinositol-binding clathrin assembly protein isoform X10

    See identical proteins and their annotated locations for XP_008018614.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  14. XM_008020428.2 → XP_008018619.1  phosphatidylinositol-binding clathrin assembly protein isoform X18

    See identical proteins and their annotated locations for XP_008018619.1

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  15. XM_038005387.1 → XP_037861315.1  phosphatidylinositol-binding clathrin assembly protein isoform X23

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  16. XM_008020422.2 → XP_008018613.1  phosphatidylinositol-binding clathrin assembly protein isoform X8

    See identical proteins and their annotated locations for XP_008018613.1

    UniProtKB/TrEMBL
    A0A0D9QUJ2
    Related
    ENSCSAP00000000031.1
    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  17. XM_008020419.2 → XP_008018610.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

    See identical proteins and their annotated locations for XP_008018610.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  18. XM_008020418.2 → XP_008018609.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

    See identical proteins and their annotated locations for XP_008018609.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  19. XM_038005381.1 → XP_037861309.1  phosphatidylinositol-binding clathrin assembly protein isoform X9

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  20. XM_038005382.1 → XP_037861310.1  phosphatidylinositol-binding clathrin assembly protein isoform X11

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  21. XM_038005380.1 → XP_037861308.1  phosphatidylinositol-binding clathrin assembly protein isoform X7

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  22. XM_008020429.2 → XP_008018620.1  phosphatidylinositol-binding clathrin assembly protein isoform X19

    See identical proteins and their annotated locations for XP_008018620.1

    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  23. XM_008020427.2 → XP_008018618.1  phosphatidylinositol-binding clathrin assembly protein isoform X17

    See identical proteins and their annotated locations for XP_008018618.1

    Conserved Domains (1) summary
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain
Nucleotide Protein
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