U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ppargc1a peroxisome proliferator-activated receptor gamma, coactivator 1 alpha [ Callorhinchus milii (elephant shark) ]

Gene ID: 103175819, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ppargc1a
Gene description
peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
See related
Ensembl:ENSCMIG00000010585
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (43160324..43215215, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890064.1 (5355254..5410185, complement)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel interacting protein 4a Neighboring gene U2 spliceosomal RNA Neighboring gene adhesion G protein-coupled receptor A3 Neighboring gene uncharacterized LOC103175820 Neighboring gene DEAH (Asp-Glu-Ala-His) box helicase 15

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Names
PPARG coactivator 1 alpha
proliferator-activated receptor gamma coactivator 1 alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    43160324..43215215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007889042.2 → XP_007887233.2  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

    UniProtKB/TrEMBL
    A0A4W3I1U0, V9K8I0
    Conserved Domains (2) summary
    smart00360
    Location:695 → 755
    RRM; RNA recognition motif
    COG0724
    Location:616 → 751
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  2. XM_042341003.1 → XP_042196937.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

    UniProtKB/TrEMBL
    A0A4W3I9Z7
    Conserved Domains (1) summary
    smart00360
    Location:530 → 590
    RRM; RNA recognition motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.