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GATAD2A GATA zinc finger domain containing 2A [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103122548, updated on 11-Mar-2024

Summary

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Gene symbol
GATAD2A
Gene description
GATA zinc finger domain containing 2A
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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See GATAD2A in Genome Data Viewer
Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 23 NC_080184.1 (15335830..15381015)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804569.1 (57622..69921, complement)

Chromosome 23 - NC_080184.1Genomic Context describing neighboring genes Neighboring gene SURP and G-patch domain containing 1 Neighboring gene MAU2 sister chromatid cohesion factor Neighboring gene uncharacterized LOC132535564 Neighboring gene uncharacterized LOC132535566 Neighboring gene NADH:ubiquinone oxidoreductase subunit A13 Neighboring gene testis specific serine kinase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor p66-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080184.1 Reference mEriEur2.1

    Range
    15335830..15381015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060181873.1 → XP_060037856.1  transcriptional repressor p66-alpha isoform X5

  2. XM_060181875.1 → XP_060037858.1  transcriptional repressor p66-alpha isoform X5

  3. XM_060181874.1 → XP_060037857.1  transcriptional repressor p66-alpha isoform X6

  4. XM_060181877.1 → XP_060037860.1  transcriptional repressor p66-alpha isoform X5

  5. XM_060181880.1 → XP_060037863.1  transcriptional repressor p66-alpha isoform X5

  6. XM_060181876.1 → XP_060037859.1  transcriptional repressor p66-alpha isoform X5

  7. XM_016192643.2 → XP_016048129.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1S3WPR1
    Conserved Domains (2) summary
    pfam16563
    Location:124 → 160
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
    cl00158
    Location:405 → 429
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  8. XM_016192645.2 → XP_016048131.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1S3WP37
    Conserved Domains (2) summary
    pfam16563
    Location:124 → 160
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
    cl00158
    Location:404 → 428
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  9. XM_016192644.2 → XP_016048130.1  transcriptional repressor p66-alpha isoform X2

    UniProtKB/TrEMBL
    A0A1S3WP43
    Conserved Domains (2) summary
    pfam16563
    Location:124 → 160
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
    cl00158
    Location:404 → 428
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  10. XM_007533161.3 → XP_007533223.1  transcriptional repressor p66-alpha isoform X4

    UniProtKB/TrEMBL
    A0A1S3ADB8
    Conserved Domains (2) summary
    pfam16563
    Location:124 → 160
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
    cl00158
    Location:403 → 427
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  11. XM_060181878.1 → XP_060037861.1  transcriptional repressor p66-alpha isoform X5

Nucleotide Protein
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