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cdk5 cyclin dependent kinase 5 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103032107, updated on 12-Sep-2024

Summary

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Gene symbol
cdk5
Gene description
cyclin dependent kinase 5
See related
EnsemblRapid:ENSAMXG00025016428
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 6 NC_064413.1 (12476768..12488690)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 10 NC_035906.1 (30949216..30956947, complement)

Chromosome 6 - NC_064413.1Genomic Context describing neighboring genes Neighboring gene autophagy related 9B Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 8 Neighboring gene anterior gradient protein 2 homolog Neighboring gene N-acetylglucosaminidase, alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent-like kinase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064413.1 Reference AstMex3_surface

    Range
    12476768..12488690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007239269.3 → XP_007239331.1  cyclin-dependent-like kinase 5

    See identical proteins and their annotated locations for XP_007239331.1

    UniProtKB/TrEMBL
    A0A8B9HJM8, A0A8B9J8S8, W5L1C4
    Related
    ENSAMXP00025019541.1, ENSAMXT00025029335.1
    Conserved Domains (1) summary
    cd07839
    Location:3 → 286
    STKc_CDK5; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5
Nucleotide Protein
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