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cdk5 cyclin-dependent kinase 5 [ Danio rerio (zebrafish) ]

Gene ID: 65234, updated on 13-Jun-2020

Summary

Official Symbol
cdk5provided by ZNC
Official Full Name
cyclin-dependent kinase 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-010131-2
See related
Ensembl:ENSDARG00000056683
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101604
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See cdk5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (33766795..33780387, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (33880620..33894212, complement)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (35029171..35042763, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 4b Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1b Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 8 Neighboring gene autophagy related 9B

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein serine/threonine kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
histone kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
axonogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
central nervous system neuron development IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic retina morphogenesis in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of neuron apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of neuron apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
optic nerve formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
peripheral nervous system neuron development IMP
Inferred from Mutant Phenotype
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription involved in G1/S transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
retina layer formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
type B pancreatic cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cyclin-dependent-like kinase 5
Names
cyclin-dependent protein kinase 5
NP_571794.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131719.1NP_571794.1  cyclin-dependent-like kinase 5

    See identical proteins and their annotated locations for NP_571794.1

    Status: PROVISIONAL

    Source sequence(s)
    AF203736
    UniProtKB/TrEMBL
    Q9DE44
    Related
    ENSDARP00000073666.3, ENSDART00000079210.5
    Conserved Domains (1) summary
    cd07839
    Location:3286
    STKc_CDK5; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    33766795..33780387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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