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NOCT nocturnin [ Physeter catodon (sperm whale) ]

Gene ID: 102992628, updated on 10-Mar-2024

Summary

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Gene symbol
NOCT
Gene description
nocturnin
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 7 NC_041220.1 (140766288..140810171)
102 previous assembly ASM283717v2 (GCF_002837175.2) 7 NC_041220.1 (140766288..140792870)

Chromosome 7 - NC_041220.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102993644 Neighboring gene uncharacterized LOC114486623 Neighboring gene E74 like ETS transcription factor 2 Neighboring gene 60S ribosomal protein L4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nocturnin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041220.1 Reference ASM283717v5 Primary Assembly

    Range
    140766288..140810171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028492324.1 → XP_028348125.1  nocturnin isoform X3

    UniProtKB/TrEMBL
    A0A455BGN8
    Conserved Domains (1) summary
    cd09096
    Location:252 → 531
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  2. XM_024119211.2 → XP_023974979.1  nocturnin isoform X2

    UniProtKB/TrEMBL
    A0A2Y9EJW4
    Conserved Domains (1) summary
    cd09096
    Location:76 → 355
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  3. XM_028492317.2 → XP_028348118.1  nocturnin isoform X1

    UniProtKB/TrEMBL
    A0A2Y9SGU0
    Conserved Domains (1) summary
    cd09096
    Location:149 → 428
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

  4. XM_024119206.3 → XP_023974974.1  nocturnin isoform X1

    UniProtKB/TrEMBL
    A0A2Y9SGU0
    Conserved Domains (1) summary
    cd09096
    Location:149 → 428
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

RNA

  1. XR_008617919.1 RNA Sequence

Nucleotide Protein
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