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RIC8B RIC8 guanine nucleotide exchange factor B [ Physeter catodon (sperm whale) ]

Gene ID: 102976668, updated on 10-Mar-2024

Summary

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Gene symbol
RIC8B
Gene description
RIC8 guanine nucleotide exchange factor B
See related
Ensembl:ENSPCTG00005004991
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 6 NC_041219.1 (39039334..39160434)
102 previous assembly ASM283717v2 (GCF_002837175.2) 6 NC_041219.1 (39039319..39160434)

Chromosome 6 - NC_041219.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase III subunit B Neighboring gene U6 spliceosomal RNA Neighboring gene regulatory factor X4 Neighboring gene uncharacterized LOC114486433 Neighboring gene transmembrane protein 263 Neighboring gene mitochondrial transcription termination factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-protein alpha-subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synembryn-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041219.1 Reference ASM283717v5 Primary Assembly

    Range
    39039334..39160434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024127250.3 → XP_023983018.1  synembryn-B isoform X1

    UniProtKB/TrEMBL
    A0A2Y9SXW0
    Related
    ENSPCTP00005007125.1, ENSPCTT00005007827.1
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 525
    Ric8; Guanine nucleotide exchange factor synembryn

  2. XM_024127252.3 → XP_023983020.1  synembryn-B isoform X4

    UniProtKB/TrEMBL
    A0A2Y9T2E8
    Related
    ENSPCTP00005007153.1, ENSPCTT00005007859.1
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 483
    Ric8; Guanine nucleotide exchange factor synembryn

  3. XM_028490543.2 → XP_028346344.1  synembryn-B isoform X2

    UniProtKB/TrEMBL
    A0A2Y9T4J9
    Related
    ENSPCTP00005007199.1, ENSPCTT00005007914.1
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 524
    Ric8; Guanine nucleotide exchange factor synembryn

  4. XM_028490545.2 → XP_028346346.1  synembryn-B isoform X3

    UniProtKB/TrEMBL
    A0A455BR44
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 524
    Ric8; Guanine nucleotide exchange factor synembryn

  5. XM_028490547.2 → XP_028346348.1  synembryn-B isoform X6

    UniProtKB/TrEMBL
    A0A455BEK2
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 483
    Ric8; Guanine nucleotide exchange factor synembryn

  6. XM_028490546.2 → XP_028346347.1  synembryn-B isoform X5

    UniProtKB/TrEMBL
    A0A455BC71
    Conserved Domains (1) summary
    pfam10165
    Location:66 → 484
    Ric8; Guanine nucleotide exchange factor synembryn

RNA

  1. XR_003680142.2 RNA Sequence

  2. XR_008617576.1 RNA Sequence

Nucleotide Protein
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