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XPOT exportin for tRNA [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102938645, updated on 10-Mar-2024

Summary

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Gene symbol
XPOT
Gene description
exportin for tRNA
See related
EnsemblRapid:ENSCMYG00015023931
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (286750794..286812578, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (286750844..286812559, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 3 Neighboring gene TANK binding kinase 1 Neighboring gene small nucleolar RNA SNORA68 Neighboring gene ribosomal protein L18a Neighboring gene KICSTOR subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA re-export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-T

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    286750794..286812578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037887403.2 → XP_037743331.1  exportin-T isoform X2

    Related
    ENSCMYP00015036576.1, ENSCMYT00015045004.1
    Conserved Domains (2) summary
    COG5101
    Location:19 → 358
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  2. XM_037887384.2 → XP_037743312.1  exportin-T isoform X1

    Conserved Domains (2) summary
    COG5101
    Location:19 → 358
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  3. XM_037887394.2 → XP_037743322.1  exportin-T isoform X1

    Conserved Domains (2) summary
    COG5101
    Location:19 → 358
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  4. XM_043548481.1 → XP_043404416.1  exportin-T isoform X1

    Conserved Domains (2) summary
    COG5101
    Location:19 → 358
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein

  5. XM_043548486.1 → XP_043404421.1  exportin-T isoform X2

    Related
    ENSCMYP00015036560.1, ENSCMYT00015044987.1
    Conserved Domains (2) summary
    COG5101
    Location:19 → 358
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:100 → 247
    Xpo1; Exportin 1-like protein
Nucleotide Protein
Heading Accession and Version

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