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Tent4b terminal nucleotidyltransferase 4B [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102912187, updated on 10-Mar-2024

Summary

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Gene symbol
Tent4b
Gene description
terminal nucleotidyltransferase 4B
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Also known as
Papd5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 5 NC_056012.1 (16570185..16634616, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501052.1 (3405842..3470053)

Chromosome 5 - NC_056012.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase 7 Neighboring gene uncharacterized LOC121829347 Neighboring gene HEAT repeat containing 3 Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAMP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
terminal nucleotidyltransferase 4B
Names
poly(A) RNA polymerase D5, non-canonical

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056012.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    16570185..16634616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016006692.2 → XP_015862178.1  terminal nucleotidyltransferase 4B isoform X2

    UniProtKB/TrEMBL
    A0A6J0E6P1
    Conserved Domains (2) summary
    cd05402
    Location:10 → 120
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    pfam03828
    Location:178 → 238
    PAP_assoc; Cid1 family poly A polymerase

  2. XM_042277348.1 → XP_042133282.1  terminal nucleotidyltransferase 4B isoform X4

    Conserved Domains (1) summary
    COG5260
    Location:2 → 262
    TRF4; DNA polymerase sigma [Replication, recombination and repair]

  3. XM_042277347.1 → XP_042133281.1  terminal nucleotidyltransferase 4B isoform X3

    Conserved Domains (1) summary
    COG5260
    Location:2 → 262
    TRF4; DNA polymerase sigma [Replication, recombination and repair]

  4. XM_006971767.3 → XP_006971829.1  terminal nucleotidyltransferase 4B isoform X1

    UniProtKB/TrEMBL
    A0A6I9KVQ4
    Conserved Domains (2) summary
    cd05402
    Location:10 → 120
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    pfam03828
    Location:178 → 238
    PAP_assoc; Cid1 family poly A polymerase

  5. XM_006971768.2 → XP_006971830.1  terminal nucleotidyltransferase 4B isoform X5

    UniProtKB/TrEMBL
    A0A6I9L5C7
    Conserved Domains (2) summary
    cd05402
    Location:10 → 120
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    pfam03828
    Location:178 → 238
    PAP_assoc; Cid1 family poly A polymerase
Nucleotide Protein
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