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ZSCAN21 zinc finger and SCAN domain containing 21 [ Pteropus alecto (black flying fox) ]

Gene ID: 102893270, updated on 30-Mar-2024

Summary

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Gene symbol
ZSCAN21
Gene description
zinc finger and SCAN domain containing 21
Locus tag
PAL_GLEAN10012116
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Also known as
ZKSCAN1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006441386.1 (9398602..9438342, complement)

NW_006441386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112485233 Neighboring gene zinc finger protein 3 Neighboring gene zinc-alpha-2-glycoprotein Neighboring gene zinc-alpha-2-glycoprotein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006441386 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 21
Names
Zinc finger and SCAN domain-containing protein 21
Zinc finger protein with KRAB and SCAN domains 1
zinc finger with KRAB and SCAN domains 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006441386.1 Reference ASM32557v1 Primary Assembly

    Range
    9398602..9438342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006918646.2 → XP_006918708.2  zinc finger and SCAN domain-containing protein 21 isoform X2

    Conserved Domains (7) summary
    smart00431
    Location:52 → 162
    SCAN; leucine rich region
    COG5048
    Location:374 → 781
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:603 → 623
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:857 → 877
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:785 → 810
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:227 → 269
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    cl26557
    Location:244 → 322
    RNase_E_G; Ribonuclease E/G family

  2. XM_006918644.3 → XP_006918706.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    See identical proteins and their annotated locations for XP_006918706.1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_025051510.1 → XP_024907278.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_015594600.1 → XP_015450086.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  5. XM_015594605.1 → XP_015450091.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  6. XM_015594603.2 → XP_015450089.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  7. XM_025051509.1 → XP_024907277.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  8. XM_025051511.1 → XP_024907279.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  9. XM_015594602.2 → XP_015450088.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type

  10. XM_015594601.2 → XP_015450087.1  zinc finger and SCAN domain-containing protein 21 isoform X1

    Conserved Domains (4) summary
    smart00431
    Location:37 → 147
    SCAN; leucine rich region
    COG5048
    Location:273 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:443 → 463
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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