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DTX4 deltex E3 ubiquitin ligase 4 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102852070, updated on 10-Mar-2024

Summary

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Gene symbol
DTX4
Gene description
deltex E3 ubiquitin ligase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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See DTX4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006400034.1 (2616140..2663192)

NW_006400034.1Genomic Context describing neighboring genes Neighboring gene glycine N-phenylacetyltransferase-like Neighboring gene FAM111 trypsin like peptidase A Neighboring gene macrophage expressed 1 Neighboring gene olfactory receptor 5AN1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006400034 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase DTX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006400034.1 Reference EleEdw1.0

    Range
    2616140..2663192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006900428.1 → XP_006900490.1  E3 ubiquitin-protein ligase DTX4

    Conserved Domains (4) summary
    cd09633
    Location:414 → 546
    Deltex_C; Domain found at the C-terminus of deltex-like
    cd00162
    Location:346 → 407
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam02825
    Location:28 → 82
    WWE; WWE domain
    cl02729
    Location:1 → 24
    WWE; WWE domain
Nucleotide Protein
Heading Accession and Version

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