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anks1b ankyrin repeat and sterile alpha motif domain containing 1B [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102688721, updated on 10-Mar-2024

Summary

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Gene symbol
anks1b
Gene description
ankyrin repeat and sterile alpha motif domain containing 1B
See related
Ensembl:ENSLOCG00000015145
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
27
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG8 NC_023186.1 (1627424..1966461)

Linkage Group LG8 - NC_023186.1Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 4 Neighboring gene bridge-like lipid transfer protein family member 3B Neighboring gene uncharacterized LOC107077943 Neighboring gene apoptotic peptidase activating factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023186.1 Chromosome LG8 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and sterile alpha motif domain-containing protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023186.1 Reference LepOcu1 Primary Assembly

    Range
    1627424..1966461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015351924.1 → XP_015207410.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X3

    UniProtKB/TrEMBL
    W5NDD6
    Conserved Domains (7) summary
    cd09499
    Location:807 → 873
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:878 → 942
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:804 → 869
    SAM; Sterile alpha motif
    cd00204
    Location:52 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:1044 → 1188
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:62 → 157
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:57 → 88
    ANK; ANK repeat [structural motif]

  2. XM_015351922.1 → XP_015207408.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X1

    UniProtKB/TrEMBL
    W5NDD6
    Conserved Domains (7) summary
    cd09499
    Location:807 → 873
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:878 → 942
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:804 → 869
    SAM; Sterile alpha motif
    cd00204
    Location:52 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:1044 → 1189
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:62 → 157
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:57 → 88
    ANK; ANK repeat [structural motif]

  3. XM_015351923.1 → XP_015207409.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X2

    UniProtKB/TrEMBL
    W5NDD6
    Related
    ENSLOCP00000018644.1, ENSLOCT00000018676.1
    Conserved Domains (7) summary
    cd09499
    Location:807 → 873
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:878 → 942
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:804 → 869
    SAM; Sterile alpha motif
    cd00204
    Location:52 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:1044 → 1189
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:62 → 157
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:57 → 88
    ANK; ANK repeat [structural motif]

  4. XM_015351925.1 → XP_015207411.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X4

    UniProtKB/TrEMBL
    W5NDD6
    Conserved Domains (7) summary
    cd09499
    Location:807 → 873
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:878 → 942
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:804 → 869
    SAM; Sterile alpha motif
    cd00204
    Location:52 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:1044 → 1189
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:62 → 157
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:57 → 88
    ANK; ANK repeat [structural motif]

  5. XM_015351926.1 → XP_015207412.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X5

    UniProtKB/TrEMBL
    W5NDD6
    Conserved Domains (7) summary
    cd09499
    Location:807 → 873
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:878 → 942
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:804 → 869
    SAM; Sterile alpha motif
    cd00204
    Location:52 → 180
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:1044 → 1189
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:62 → 157
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:57 → 88
    ANK; ANK repeat [structural motif]

  6. XM_015351927.1 → XP_015207413.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X6

    UniProtKB/TrEMBL
    W5NDD6
    Conserved Domains (7) summary
    cd09499
    Location:653 → 719
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:724 → 788
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:650 → 715
    SAM; Sterile alpha motif
    cd00204
    Location:1 → 110
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:890 → 1035
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:10 → 101
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:5 → 34
    ANK; ANK repeat [structural motif]

  7. XM_015351928.1 → XP_015207414.1  ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X7

    Conserved Domains (4) summary
    cd09499
    Location:392 → 458
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:463 → 527
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:389 → 454
    SAM; Sterile alpha motif
    cd01274
    Location:629 → 774
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
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