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SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102575062, updated on 8-May-2024

Summary

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Gene symbol
SMARCA4
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Locus tag
Y1Q_0008999
See related
EnsemblRapid:ENSAMIG00015025916
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 8 NC_081831.1 (23497733..23550680, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709389.1 (251042..304434)

Chromosome 8 - NC_081831.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 6 Neighboring gene low density lipoprotein receptor Neighboring gene translocase of inner mitochondrial membrane 29 Neighboring gene Yip1 domain family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription activator BRG1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081831.1 Reference rAllMis1 Primary Assembly

    Range
    23497733..23550680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019486180.2 → XP_019341725.1  transcription activator BRG1 isoform X6

    UniProtKB/TrEMBL
    A0A151NTY2

  2. XM_014606277.3 → XP_014461763.1  transcription activator BRG1 isoform X5

    UniProtKB/TrEMBL
    A0A151NTY2
    Conserved Domains (9) summary
    cd05516
    Location:1426 → 1532
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:610 → 654
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:458 → 530
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:772 → 911
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:43 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:755 → 1050
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1077 → 1192
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:171 → 205
    QLQ; QLQ
    pfam14619
    Location:1287 → 1354
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  3. XM_019486179.2 → XP_019341724.1  transcription activator BRG1 isoform X2

    UniProtKB/TrEMBL
    A0A151NU66

  4. XM_014606276.3 → XP_014461762.1  transcription activator BRG1 isoform X4

    UniProtKB/TrEMBL
    A0A151NU66
    Conserved Domains (9) summary
    cd05516
    Location:1459 → 1565
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:610 → 654
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:458 → 530
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:772 → 911
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:43 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:755 → 1050
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1077 → 1192
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:171 → 205
    QLQ; QLQ
    pfam14619
    Location:1320 → 1387
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  5. XM_014606275.3 → XP_014461761.1  transcription activator BRG1 isoform X1

    UniProtKB/TrEMBL
    A0A151NU66
    Related
    ENSAMIP00015035625.1, ENSAMIT00015049082.1
    Conserved Domains (9) summary
    cd05516
    Location:1459 → 1565
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:610 → 654
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:458 → 530
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:772 → 911
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:43 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:755 → 1050
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1077 → 1192
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:171 → 205
    QLQ; QLQ
    pfam14619
    Location:1320 → 1387
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  6. XM_019486181.2 → XP_019341726.1  transcription activator BRG1 isoform X8

    UniProtKB/TrEMBL
    A0A151NTY2

  7. XM_014606278.3 → XP_014461764.1  transcription activator BRG1 isoform X7

    UniProtKB/TrEMBL
    A0A151NTY2
    Related
    ENSAMIP00015035626.1, ENSAMIT00015049083.1
    Conserved Domains (9) summary
    cd05516
    Location:1423 → 1529
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:610 → 654
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:458 → 530
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:772 → 911
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:43 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:755 → 1050
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1077 → 1192
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:171 → 205
    QLQ; QLQ
    pfam14619
    Location:1287 → 1354
    SnAC; Snf2-ATP coupling, chromatin remodelling complex

  8. XM_006265570.4 → XP_006265632.2  transcription activator BRG1 isoform X3

    UniProtKB/TrEMBL
    A0A151NUR7
    Related
    ENSAMIP00015035624.1, ENSAMIT00015049081.1
    Conserved Domains (9) summary
    cd05516
    Location:1456 → 1562
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:610 → 654
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:458 → 530
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:772 → 911
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam08430
    Location:54 → 164
    Forkhead_N; Forkhead N-terminal region
    pfam00176
    Location:755 → 1050
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1077 → 1192
    Helicase_C; Helicase conserved C-terminal domain
    pfam08880
    Location:171 → 205
    QLQ; QLQ
    pfam14619
    Location:1320 → 1387
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
Nucleotide Protein
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