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TNFAIP3 TNF alpha induced protein 3 [ Vicugna pacos (alpaca) ]

Gene ID: 102544179, updated on 10-Mar-2024

Summary

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Gene symbol
TNFAIP3
Gene description
TNF alpha induced protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 8 Unlocalized Scaffold NW_021964168.1 (22770232..22785358, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882708.1 (20170190..20185086, complement)

NW_021964168.1Genomic Context describing neighboring genes Neighboring gene ARFGEF family member 3 Neighboring gene p53 apoptosis effector related to PMP22 Neighboring gene oligodendrocyte transcription factor 3 Neighboring gene interferon gamma receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor alpha-induced protein 3
Names
tumor necrosis factor, alpha-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964168.1 Reference VicPac3.1 Primary Assembly

    Range
    22770232..22785358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006197781.3 → XP_006197843.1  tumor necrosis factor alpha-induced protein 3

    UniProtKB/TrEMBL
    A0A6I9HYS5
    Conserved Domains (2) summary
    smart00259
    Location:470 → 495
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:98 → 257
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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