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SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102497364, updated on 10-Mar-2024

Summary

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Gene symbol
SCUBE2
Gene description
signal peptide, CUB domain and EGF like domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See SCUBE2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006201028.1 (1024837..1116300, complement)

NW_006201028.1Genomic Context describing neighboring genes Neighboring gene TMEM9 domain family member B Neighboring gene nuclear receptor interacting protein 3 Neighboring gene uncharacterized LOC102497088 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene nucleolin pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene DENN domain containing 5A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006201028 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal peptide, CUB and EGF-like domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006201028.1 Reference TupChi_1.0

    Range
    1024837..1116300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027766104.1 → XP_027621905.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X3

  2. XM_014581896.2 → XP_014437382.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X4

    Conserved Domains (5) summary
    cd00041
    Location:758 → 869
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:706 → 753
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:15 → 50
    EGF_3; EGF domain
    pfam14670
    Location:373 → 408
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:278 → 327
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_014581894.2 → XP_014437380.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X1

    Conserved Domains (5) summary
    cd00041
    Location:810 → 921
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:758 → 805
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:15 → 50
    EGF_3; EGF domain
    pfam14670
    Location:373 → 408
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:278 → 327
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_014581897.2 → XP_014437383.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X6

    Conserved Domains (5) summary
    cd00041
    Location:655 → 766
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:603 → 650
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:15 → 50
    EGF_3; EGF domain
    pfam14670
    Location:373 → 408
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:278 → 327
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_006162922.3 → XP_006162984.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X2

    Conserved Domains (5) summary
    cd00041
    Location:804 → 915
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:752 → 799
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:15 → 50
    EGF_3; EGF domain
    pfam14670
    Location:373 → 408
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:278 → 327
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_006162924.3 → XP_006162986.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X7

    Conserved Domains (5) summary
    cd00041
    Location:649 → 760
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam07699
    Location:597 → 644
    GCC2_GCC3; GCC2 and GCC3
    pfam12947
    Location:15 → 50
    EGF_3; EGF domain
    pfam14670
    Location:373 → 408
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:278 → 327
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  7. XM_027766105.1 → XP_027621906.1  signal peptide, CUB and EGF-like domain-containing protein 2 isoform X5

RNA

  1. XR_001369383.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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