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TRIM17 tripartite motif containing 17 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102471374, updated on 10-Mar-2024

Summary

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Gene symbol
TRIM17
Gene description
tripartite motif containing 17
Locus tag
TREES_T100016850
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See TRIM17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159672.1 (8754997..8766903, complement)

NW_006159672.1Genomic Context describing neighboring genes Neighboring gene translation machinery-associated protein 16 pseudogene Neighboring gene tripartite motif containing 11 Neighboring gene H3.4 histone, cluster member Neighboring gene histone H2A type 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006159672 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006159672.1 Reference TupChi_1.0

    Range
    8754997..8766903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006146987.2 → XP_006147049.1  E3 ubiquitin-protein ligase TRIM17

    UniProtKB/TrEMBL
    L9KWP1
    Conserved Domains (4) summary
    smart00336
    Location:115 → 156
    BBOX; B-Box-type zinc finger
    cd00162
    Location:36 → 88
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd15812
    Location:317 → 493
    SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
    cl19511
    Location:157 → 280
    DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
Nucleotide Protein
Heading Accession and Version

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