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ZBTB17 zinc finger and BTB domain containing 17 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102446629, updated on 10-Mar-2024

Summary

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Gene symbol
ZBTB17
Gene description
zinc finger and BTB domain containing 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005851305.1 (236920..305449, complement)

NW_005851305.1Genomic Context describing neighboring genes Neighboring gene filamin binding LIM protein 1 Neighboring gene uncharacterized LOC106731327 Neighboring gene spen family transcriptional repressor Neighboring gene steroid receptor associated and regulated protein Neighboring gene heat shock protein family B (small) member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005851305 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005851305.1 Reference PelSin_1.0 Primary Assembly

    Range
    236920..305449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025179993.1 → XP_025035778.1  LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 17

    Conserved Domains (8) summary
    COG5048
    Location:467 → 627
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:470 → 490
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:610 → 629
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:320 → 342
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:24 → 118
    BTB; BTB/POZ domain
    cl26464
    Location:814 → 1279
    Atrophin-1; Atrophin-1 family
    cl27351
    Location:113 → 221
    E3_binding; e3 binding domain
    cl27975
    Location:1042 → 1269
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
Nucleotide Protein
Heading Accession and Version

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